Dr Davis MCCARTHY

Research Fellow

School of Mathematics and Statistics

  • Room: MIG, Building 184
  • Building: 184
  • Campus: Parkville

Research Groups

Recent Publications

  • Anna SE Cuomo, Daniel D Seaton, D. McCarthy, Iker Martinez, Marc Jan Bonder, Jose Garcia-Bernardo, Shradha Amatya, Pedro Madrigal, Abigail Isaacson, Florian Buettner, Andrew Knights, Kedar Nath Natarajan, Ludovic Vallier, John C Marioni, Mariya Chhatriwala, Oliver Stegle, HipSci Consortium, CA Agu, A Alderton, P Danecek, R Denton, R Durbin, DJ Gaffney, A Goncalves, R Halai, S Harper, CM Kirton, A Kolb-Kokocinski, A Leha, Y Memari, M Patel, E Birney, FP Casale, L Clarke, PW Harrison, H Kilpinen, I Streeter, D Denovi, R Meleckyte, N Moens, FM Watt, WH Ouwehand, AI Lamond, D Bensaddek, P Beales. Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression.. Nature communications, 11, 810 (14pp), 2020. doi: 10.1038/s41467-020-14457-z.

  • David Laehnemann, Johannes Koester, Ewa Szczurek, D. McCarthy, Stephanie C Hicks, Mark D Robinson, Catalina A Vallejos, Kieran R Campbell, Niko Beerenwinkel, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M Keizer, Indu Khatri, Szymon M Kielbasa, Jan O Korbel, Alexey M Kozlov, Tzu-Hao Kuo, Boudewijn PF Lelieveldt, Ion I Mandoiu, John C Marioni, Tobias Marschall, Felix Moelder, Amir Niknejad, Lukasz Raczkowski, Marcel Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J Theis, H. Yang, Alex Zelikovsky, Alice C McHardy, Benjamin J Raphael, S. Shah, Alexander Schonhuth, David Lähnemann, Johannes Köster, Felix Mölder, Alexander Schönhuth. Eleven grand challenges in single-cell data science.. Genome biology, 21, 31 (35pp), 2020. doi: 10.1186/s13059-020-1926-6.

  • D. McCarthy, Raghd Rostom, Y. Huang, Daniel J Kunz, Petr Danecek, Marc Jan Bonder, Tzachi Hagai, Ruqian Lyu, HipSci Consortium, Wenyi Wang, Daniel J Gaffney, Benjamin D Simons, Oliver Stegle, Sarah A Teichmann. Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes.. Nature methods, 2020. doi: 10.1038/s41592-020-0766-3.

  • ASE Cuomo, DD Seaton, D. McCarthy, I Martinez, MJ Bonder, J Garcia-Bernardo, S Amatya, P Madrigal, A Isaacson, F Buettner, A Knights, KN Natarajan, CA Agu, A Alderton, P Danecek, R Denton, R Durbin, DJ Gaffney, A Goncalves, R Halai, S Harper, CM Kirton, A Kolb-Kokocinski, A Leha, Y Memari, M Patel, E Birney, FP Casale, L Clarke, PW Harrison, H Kilpinen, I Streeter, D Denovi, R Meleckyte, N Moens, FM Watt, WH Ouwehand, AI Lamond, D Bensaddek, P Beales, L Vallier, JC Marioni, M Chhatriwala, O Stegle. Publisher Correction: Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression (Nature Communications, (2020), 11, 1, (810), 10.1038/s41467-020-14457-z). Nature Communications, 11, 2020. doi: 10.1038/s41467-020-15098-y.

  • L Yiangou, RA Grandy, CM Morell, RA Tomaz, A Osnato, J Kadiwala, D Muraro, J Garcia-Bernardo, S Nakanoh, WG Bernard, D Ortmann, D. McCarthy, I Simonic, S Sinha, L Vallier. Method to Synchronize Cell Cycle of Human Pluripotent Stem Cells without Affecting Their Fundamental Characteristics.. Stem cell reports, 12, 165-179, 2019. doi: 10.1016/j.stemcr.2018.11.020.

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