Publications

Back to staff profile

  • ALA Neves, Y. Chen, K-A Lê Cao, S Mandal, TJ Sharpton, T McAllister, LL Guan, K. Le-Cao. Taxonomic and functional assessment using metatranscriptomics reveals the effect of Angus cattle on rumen microbial signatures.. animal, 14, 731-744, 2020. doi: 10.1017/S1751731119002453.

  • Simon Poirier, Sebastien Dejean, Cedric Midoux, Kim-Anh Le Cao, OLIVIER CHAPLEUR, K. Le-Cao. Integrating independent microbial studies to build predictive models of anaerobic digestion inhibition. Cold Spring Harbor Laboratory, 2020. doi: 10.1101/2020.03.16.993220.

  • Paul Angel, Nadia Rajab, Yidi Deng, Chris Pacheco, Tyrone Chen, Kim-Anh Lê Cao, Jarny Choi, Christine Wells, K. Le-Cao. A simple, scalable approach to building a cross-platform transcriptome atlas. Cold Spring Harbor Laboratory, 2020. doi: 10.1101/2020.03.09.984468.

  • Laetitia Cardona, Kim Anh Lê Cao, Francesc Puig-Castellví, Chrystelle Bureau, Céline Madigou, Laurent Mazéas, Olivier Chapleur, K. Le-Cao. Integrative analyses to investigate the link between microbial activity and molecules degradation during anaerobic digestion. Cold Spring Harbor Laboratory, 2020. doi: 10.1101/2020.02.13.946970.

  • Carolina Gubert, Geraldine Kong, Jamie JM Liew, Chloe Love, Yiwen Wang, Kim-Anh Le Cao, Thibault Renoir, Anthony J Hannan, K. Le-Cao. The role of gut microbiota and gastrointestinal dysfunction in a mouse model of Huntington's disease. NEUROGASTROENTEROLOGY AND MOTILITY, 32, 2020.

  • C Madigou, KA Lê Cao, C Bureau, L Mazéas, S Déjean, O Chapleur, K. Le-Cao. Ecological consequences of abrupt temperature changes in anaerobic digesters. Chemical Engineering Journal, 361, 266-277, 2019. doi: 10.1016/j.cej.2018.12.003.

  • K Buchanan, AM Mehdi, I Hughes, A Cotterill, KA Le Cao, R Thomas, M Harris, K. Le-Cao. An improved clinical model to predict stimulated C-peptide in children with recent-onset type 1 diabetes. Pediatric Diabetes, 166-171, 2019. doi: 10.1111/pedi.12808.

  • Amy H Lee, Casey P Shannon, Nelly Amenyogbe, Tue B Bennike, Joann Diray-Arce, Olubukola T Idoko, Erin E Gill, Rym Ben-Othman, William S Pomat, Simon D van Haren, Kim-Anh Lê Cao, Momoudou Cox, Alansana Darboe, Reza Falsafi, D. Ferrari, Daniel J Harbeson, Daniel He, Cai Bing, Samuel J Hinshaw, Jorjoh Ndure, Jainaba Njie-Jobe, Matthew A Pettengill, Peter C Richmond, Rebecca Ford, Gerard Saleu, Geraldine Masiria, John Paul Matlam, Wendy Kirarock, Elishia Roberts, Mehrnoush Malek, Guzmán Sanchez-Schmitz, Amrit Singh, Asimenia Angelidou, Kinga K Smolen, EPIC Consortium, Ryan R Brinkman, Al Ozonoff, Robert EW Hancock, Anita HJ van den Biggelaar, Hanno Steen, Scott J Tebbutt, Beate Kampmann, Ofer Levy, Tobias R Kollmann, K. Le-Cao. Dynamic molecular changes during the first week of human life follow a robust developmental trajectory.. Nature communications, 10, 1092 (14pp), 2019. doi: 10.1038/s41467-019-08794-x.

  • Syeda F Zahir, Alison Griffin, J Lennert Veerman, Dianna J Magliano, Jonathan E Shaw, Le Cao Kim-Anh, Ahmed M Mehdi, KAL Cao, K. Le-Cao. Exploring the association between BMI and mortality in Australian women and men with and without diabetes: the AusDiab study.. Diabetologia, 62, 754-758, 2019. doi: 10.1007/s00125-019-4830-4.

  • LM Rehaume, N Matigian, AM Mehdi, N Lachner, KL Bowerman, J Daly, KA Lê Cao, P Hugenholtz, R Thomas, K. Le-Cao. IL-23 favours outgrowth of spondyloarthritis-associated pathobionts and suppresses host support for homeostatic microbiota.. Annals of the rheumatic diseases, 78, 494-503, 2019. doi: 10.1136/annrheumdis-2018-214381.

  • MP Watts, LP Spurr, KA Lê Cao, R Wick, JF Banfield, JW Moreau, K. Le-Cao. Genome-resolved metagenomics of an autotrophic thiocyanate-remediating microbial bioreactor consortium.. Water research, 158, 106-117, 2019. doi: 10.1016/j.watres.2019.02.058.

  • Luyi Tian, Xueyi Dong, Saskia Freytag, Kim-Anh Le Cao, Shian Su, Abolfazl JalalAbadi, Daniela Amann-Zalcenstein, Tom S Weber, Azadeh Seidi, Jafar S Jabbari, Shalin H Naik, M. Ritchie, Kim-Anh Lê Cao, K. Le-Cao. Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments.. Nature methods, 16, 479-+, 2019. doi: 10.1038/s41592-019-0425-8.

  • Antoine Bodein, Olivier Chapleur, Arnaud Droit, Kim-Anh Le Cao, Kim-Anh Lê Cao, K. Le-Cao. A Generic Multivariate Framework for the Integration of Microbiome Longitudinal Studies With Other Data Types.. Frontiers in genetics, 10, 963 (18pp), 2019. doi: 10.3389/fgene.2019.00963.

  • Amrit Singh, Casey P Shannon, Benoît Gautier, Florian Rohart, Michaël Vacher, Scott J Tebbutt, Kim-Anh Lê Cao, K. Le-Cao. DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays.. Bioinformatics (Oxford, England), 35, 3055-3062, 2019. doi: 10.1093/bioinformatics/bty1054.

  • Sandra Pavey, Alex Pinder, Winnie Fernando, Nicholas Matigian, Dubravka Skalamera, Kim-Anh Le Cao, Dorothy Loo-Oey, Michelle M Hill, Mitchell Stark, Michael Kimlin, Andrew Burgess, Nicole Cloonan, Richard A Sturm, Brian Gabrielli, Kim-Anh Lê Cao, N D’Arcy, Dorothy Loo‐Oey, K. Le-Cao. Multiple interaction nodes define the postreplication repair response to UV‐induced DNA damage that is defective in melanomas and correlated with UV signature mutation load. Molecular oncology, 14, 22-41, 2019. doi: 10.1002/1878-0261.12601.

  • Mark Asquith, Peter R Sternes, Mary-Ellen Costello, Lisa Karstens, Sarah Diamond, Tammy M Martin, Zhixiu Li, Mhairi S Marshall, Timothy D Spector, Le Cao Kim-Anh, James T Rosenbaum, Matthew A Brown, Kim-Anh le Cao, K. Le-Cao. HLA Alleles Associated With Risk of Ankylosing Spondylitis and Rheumatoid Arthritis Influence the Gut Microbiome.. Arthritis and Rheumatology, 71, 1642-1650, 2019. doi: 10.1002/art.40917.

  • Kim‐Anh Lê Cao, K. Le-Cao. Statistical analysis of microbiome data with R. YinglinXia, JunSun, Ding‐GenChen. (2018). Singapore: Springer. 505 pages, ISBN: 978‐981‐13‐1533‐6. Biometrical Journal, 61, 1604-1605, 2019. doi: 10.1002/bimj.201900176.

  • Yiwen Wang, Kim-Anh LêCao, K. Le-Cao. Managing batch effects in microbiome data.. Briefings in bioinformatics, 2019. doi: 10.1093/bib/bbz105.

  • Nadia Rajab, Paul Angel, Mariola Kurowska-Stolarska, Simon Milling, Chris Pacheco, Matt Rutar, Jarny Choi, Christine Wells, Yidi Deng, Jennifer Gu, Vanta Jameson, Chris Pacheco Rivera, Andrew L Laslett, Kim-Anh Le Cao, K. Le-Cao. iMAC: An interactive atlas to explore phenotypic differences between in vivo, ex vivo and in vitro-derived myeloid cells in the Stemformatics platform. Cold Spring Harbor Laboratory, 2019. doi: 10.1101/719237.

  • Ahmed M Mehdi, Emma E Hamilton-Williams, Alexandre Cristino, Anette Ziegler, Ezio Bonifacio, Kim-Anh Le Cao, Mark Harris, Ranjeny Thomas, K. Le-Cao. A peripheral blood transcriptomic signature predicts autoantibody development in infants at risk of type 1 diabetes.. JCI insight, 3, 2018. doi: 10.1172/jci.insight.98212.

  • Nan Xie, Nicholas Matigian, Tharindu Vithanage, Kye Gregory, Zeyad D Nassar, Peter J Cabot, Paul N Shaw, Carl MJ Kirkpatrick, Kim-Anh Lê Cao, David Sturgess, Marie-Odile Parat, K. Le-Cao. Effect of Perioperative Opioids on Cancer-Relevant Circulating Parameters: Mu Opioid Receptor and Toll-Like Receptor 4 Activation Potential, and Proteolytic Profile.. Clinical cancer research : an official journal of the American Association for Cancer Research, 24, 2319-2327, 2018. doi: 10.1158/1078-0432.CCR-18-0172.

  • AL Hanson, T Cuddihy, K Haynes, D Loo, CJ Morton, U Oppermann, P Leo, GP Thomas, KA Lê Cao, TJ Kenna, MA Brown, K. Le-Cao. Genetic Variants in ERAP1 and ERAP2 Associated With Immune-Mediated Diseases Influence Protein Expression and the Isoform Profile. Arthritis and Rheumatology, 70, 255-265, 2018. doi: 10.1002/art.40369.

  • MR Hervé, F Nicolè, KA Lê Cao, K. Le-Cao. Multivariate Analysis of Multiple Datasets: a Practical Guide for Chemical Ecology.. Journal of chemical ecology, 44, 215-234, 2018. doi: 10.1007/s10886-018-0932-6.

  • Luyi Tian, Xueyi Dong, Saskia Freytag, Kim-Anh Le Cao, Shian Su, Daniela Amann-Zalcenstein, Tom Weber, Azadeh Seidi, Shalin Naik, M. Ritchie, K. Le-Cao. scRNA-seq mixology: towards better benchmarking of single cell RNA-seq protocols and analysis methods. 2018. doi: 10.1101/433102.

  • N D Arcy, N Matigian, KA Lê Cao, B Gabrielli, K. Le-Cao. Pathway dysregulation analysis of the nucleotide excision repair mechanisms reveals it is not a common feature of melanomas. Pigment Cell and Melanoma Research, 336-338, 2018. doi: 10.1111/pcmr.12740.

  • Alok K Shah, Gunter Hertel, Ian Brown, Clay Winterford, Renhua Na, Kim-Anh Le Cao, Bradley A Spicer, Michelle A Dunstone, Wayne A Phillips, Reginald Lord, A. Barbour, David Watson, Virendra Joshi, David C Whiteman, Michelle M Hill, G Hartel, KA Lê Cao, K. Le-Cao. Evaluation of serum glycoprotein biomarker candidates for detection of esophageal adenocarcinoma and surveillance of barrett’s esophagus. Molecular and Cellular Proteomics, 17, 2324-2334, 2018. doi: 10.1074/mcp.RA118.000734.

  • G Kong, KAL Cao, LM Judd, S. Li, T Renoir, AJ Hannan, K. Le-Cao. Microbiome profiling reveals gut dysbiosis in a transgenic mouse model of Huntington's disease.. Neurobiology of disease, 104268 (9pp), 2018. doi: 10.1016/j.nbd.2018.09.001.

  • Patrick G Gavin, Jane A Mullaney, Dorothy Loo, Kim-Anh Le Cao, Peter A Gottlieb, Michelle M Hill, Danny Zipris, Emma E Hamilton-Williams, K. Le-Cao. Intestinal Metaproteomics Reveals Host-Microbiota Interactions in Subjects at Risk for Type 1 Diabetes. DIABETES CARE, 41, 2178-2186, 2018. doi: 10.2337/dc18-0777.

  • David LA Wood, Nancy Lachner, Jean-Marie Tan, Stephanie Tang, Nicola Angel, Antonia Laino, Richard Linedale, Kim-Anh Le Cao, Mark Morrison, Ian H Frazer, H Peter Soyer, Philip Hugenholtz, Kim-Anh Lê Cao, K. Le-Cao. A natural history of actinic keratosis and cutaneous squamous cell carcinoma microbiomes. mBio, 9, 2018. doi: 10.1128/mBio.01432-18.

  • A Neves, K Le Cao, S Mandal, T Sharpton, T McAllister, L Guan, K. Le-Cao. Taxonomic and functional assessment reveals specific rumen microbial species and gene families associated with feed efficiency in Angus cattle. JOURNAL OF ANIMAL SCIENCE, 96, 190-191, 2018.

  • Linda A Bradbury, Kelly A Hollis, Benoit Gautier, Sateesh Shankaranarayana, Philip C Robinson, Nivene Saad, Kim-Anh Le Cao, Matthew A Brown, Kim-Anh Lê Cao, K. Le-Cao. Diffusion-weighted Imaging Is a Sensitive and Specific Magnetic Resonance Sequence in the Diagnosis of Ankylosing Spondylitis.. The Journal of rheumatology, 45, 771-778, 2018. doi: 10.3899/jrheum.170312.

  • A. Singh, CP Shannon, Y Kim, M DeMarco, K-A Le Cao, G Gauvreau, JM Fitzgerald, L-P Boulet, SJ Tebbutt, K. Le-Cao. Multi-Omic Biomarker Signatures Are Predictive Of The Allergen-Induced Late Phase Asthmatic Response. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 195, 2017.

  • Linda Rehaume, Nicholas Matigian, Kate Ormerod, Alicia Kang, Richard Linedale, Olga Zbarskaya, Kristine Kikly, Joshua Daly, Nancy Lachner, Philip Hugenholtz, Mark Morrison, Kim-Anh Le Cao, Ranjeny Thomas, K. Le-Cao. IL-23 Promotes Fecal Microbiota Dysbiosis Associated with Susceptibility to Spondyloarthritis and Ileitis in ZAP-70 Mutant SKG Mice. ARTHRITIS & RHEUMATOLOGY, 69, 2017.

  • Rabia Moentadj, Linda Rehaume, Paraic O Cuiv, Kate Ormerod, Muralidhara Maradana, Vanessa Anne Lakis, Mark Morrison, Philip Hugenholtz, Helen Benham, Kim-Anh Le Cao, Ranjeny Thomas, K. Le-Cao. Streptococcus Species Enriched in the Oral Cavity of RA Patients: A Persistent Source of Peptidoglycan-Polysaccharide Polymers Which Drive Disseminated Synovial Inflammation. ARTHRITIS & RHEUMATOLOGY, 69, 2017.

  • R Désert, F Rohart, F Canal, M Sicard, M Desille, S Renaud, B Turlin, P Bellaud, C Perret, B Clément, KA Lê Cao, O Musso, K. Le-Cao. Human hepatocellular carcinomas with a periportal phenotype have the lowest potential for early recurrence after curative resection.. Hepatology (Baltimore, Md.), 66, 1502-1518, 2017. doi: 10.1002/hep.29254.

  • Mathew P Watts, H. Gan, L. Peng, Kim-Anh Le Cao, John W Moreau, KA Lê Cao, K. Le-Cao. In situ stimulation of thiocyanate biodegradation through phosphate amendment in gold mine tailings water. Environmental science & technology, 51, 13353-13362, 2017. doi: 10.1021/acs.est.7b04152.

  • Florian Rohart, Benoit Gautier, Amrit Singh, Kim-Anh Le Cao, K. Le-Cao. mixOmics: an R package for 'omics feature selection and multiple data integration. 2017. doi: 10.1101/108597.

  • ME Costello, M Asquith, KA Le Cao, S Diamond, T Martin, JT Rosenbaum, MA Brown, K. Le-Cao. HLA-B27 HAS MAJOR EFFECTS ON THE INTESTINAL MICROBIOME. CLINICAL AND EXPERIMENTAL RHEUMATOLOGY, 34, 732 (1pp), 2016.

  • AL Hanson, KA Le Cao, TJ Kenna, MA Brown, K. Le-Cao. KILLER IMMUNOGLOBULIN-LIKE RECEPTORS ARE ASSOCIATED WITH ANKYLOSING SPONDYLITIS. CLINICAL AND EXPERIMENTAL RHEUMATOLOGY, 34, 730 (1pp), 2016.

  • Amrit Singh, Benoit Gautier, Casey Shannon, Florian Rohart, Michael Vacher, Scott Tebutt, Kim-Anh Le Cao, K. Le-Cao. DIABLO: from multi-omics assays to biomarker discovery, an integrative approach. 2016. doi: 10.1101/067611.

  • Florian Rohart, Aida Eslami, Nicholas Matigian, Stephanie Bougeard, Kim-Anh Le Cao, K. Le-Cao. MINT: A multivariate integrative method to identify reproducible molecular signatures across independent experiments and platforms. 2016. doi: 10.1101/070813.

  • Jasmin Straube, Bevan Emma Huang, Kim-Anh Le Cao, K. Le-Cao. DynOmics to identify delays and co-expression patterns across time course experiments. 2016. doi: 10.1101/076257.

  • Florian Rohart, Elizabeth A Mason, Nicholas Matigian, Rowland Mosbergen, Othmar Korn, Tyrone Chen, Suzanne Butcher, Jatin Patel, Kerry Atkinson, Kiarash Khosrotehrani, Nicholas M Fisk, Kim-Anh Le Cao, Christine A Wells, Kim-Anh Lê Cao, K. Le-Cao. A molecular classification of human mesenchymal stromal cells.. PeerJ, 4, e1845 (23pp), 2016. doi: 10.7717/peerj.1845.

  • C Liu, F Rohart, PT Simpson, KK Khanna, MA Ragan, KA Lê Cao, K. Le-Cao. Integrating Multi-omics Data to Dissect Mechanisms of DNA repair Dysregulation in Breast Cancer. Scientific Reports, 6, 2016. doi: 10.1038/srep34000.

  • Carly Fox, Duncan Lambie, James S Wilmott, Alex Pinder, Sandra Pavey, Kim-Anh Lê Cao, Taner Akalin, Isil Kilinc Karaarslan, Fezal Ozdemir, Richard A Scolyer, Miko Yamada, H Peter Soyer, Helmut Schaider, Brian Gabrielli, K. Le-Cao. Multiparameter analysis of naevi and primary melanomas identifies a subset of naevi with elevated markers of transformation.. Pigment cell & melanoma research, 29, 444-452, 2016. doi: 10.1111/pcmr.12489.

  • Alok K Shah, Kim-Anh Le Cao, Eunju Choi, David Chen, Benoit Gautier, Derek Nancarrow, David C Whiteman, Peter R Baker, Karl R Clauser, Robert J Chalkley, Nicholas A Saunders, A. Barbour, Virendra Joshi, Michelle M Hill, Kim-Anh Lê Cao, K. Le-Cao. Glyco-centric lectin magnetic bead array (LeMBA) − proteomics dataset of human serum samples from healthy, Barrett׳s esophagus and esophageal adenocarcinoma individuals. Data in brief, 7, 1058-1062, 2016. doi: 10.1016/j.dib.2016.03.081.

  • Amy E Anderson, Arthur G Pratt, Mamdouh AK Sedhom, John Paul Doran, Christine Routledge, Ben Hargreaves, P. Brown, Kim-Anh Le Cao, John D Isaacs, Ranjeny Thomas, Kim-Anh Lê Cao, K. Le-Cao. IL-6-driven STAT signalling in circulating CD4+lymphocytes is a marker for early anticitrullinated peptide antibody-negative rheumatoid arthritis. Annals of the rheumatic diseases, 75, 466-473, 2016. doi: 10.1136/annrheumdis-2014-205850.

  • Chao Liu, Sriganesh Srihari, Samir Lal, Benoit Gautier, Peter T Simpson, Kum Kum Khanna, Mark A Ragan, Kim-Anh Le Cao, Kim-Anh Lê Cao, Kim-Anh Lê Cao, K. Le-Cao. Personalised pathway analysis reveals association between DNA repair pathway dysregulation and chromosomal instability in sporadic breast cancer.. Molecular oncology, 10, 179-193, 2016. doi: 10.1016/j.molonc.2015.09.007.

  • Linda A Bradbury, Kelly A Hollis, Benoit Gautier, Sateesh Shankaranarayana, Philip Robinson, Nivene Saad, Kim-Anh Le Cao, Matthew A Brown, K. Le-Cao. Diffusion Weighted Imaging Is a Sensitive and Specific MRI Protocol for the Diagnosis and Assessment of Disease Severity in Ankylosing Spondylitis. ARTHRITIS & RHEUMATOLOGY, 67, 2015.

  • Colm Keane, Frank Vari, Mark Hertzberg, Kim-Anh Le Cao, Michael R Green, Erica Han, John F Seymour, Rodney J Hicks, Devinder Gill, Pauline Crooks, Clare Gould, Kimberley Jones, Lyn R Griffiths, Dipti Talaulikar, Sanjiv Jain, Josh Tobin, Maher K Gandhi, K. Le-Cao. Ratios of T-cell immune effectors and checkpoint molecules as prognostic biomarkers in diffuse large B-cell lymphoma: a population-based study.. The Lancet. Haematology, 2, E445-E455, 2015. doi: 10.1016/S2352-3026(15)00150-7.

  • J Straube, A Bernard, BE Huang, KA Le Cao, K. Le-Cao. Analysing delays between time course gene expression data and biomarkers. CEUR Workshop Proceedings, 1468, 2015.

  • Jasmin Straube, Alain-Dominique Gorse, Bevan Emma Huang, Kim-Anh Le Cao, PROOF Centre of Excellence Team, Kim-Anh Lê Cao, K. Le-Cao. A linear mixed model spline framework for analysing time course 'Omics' data. PloS one, 10, e0134540 (20pp), 2015. doi: 10.1371/journal.pone.0134540.

  • Helen Benham, Hendrik J Nel, Soi Cheng Law, Ahmed M Mehdi, Shayna Street, Nishta Ramnoruth, Helen Pahau, Bernett T Lee, Jennifer Ng, Marion EG Brunck, Claire Hyde, Leendert A Trouw, Nadine L Dudek, Anthony W Purcell, John E Connolly, Sanjoy K Paul, Kim-Anh Le Cao, Ranjeny Thomas, Kim-Anh Lê Cao, Marion E G. Brunck, Brendan J O’Sullivan, K. Le-Cao. Citrullinated peptide dendritic cell immunotherapy in HLA risk genotype–positive rheumatoid arthritis patients. Science translational medicine, 7, 290ra87 (11pp), 2015. doi: 10.1126/scitranslmed.aaa9301.

  • Ralph Patrick, Kim-Anh Le Cao, Bostjan Kobe, Mikael Boden, Kim-Anh Lê Cao, Mikael Bodén, K. Le-Cao. PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation events.. Bioinformatics (Oxford, England), 31, 382-389, 2015. doi: 10.1093/bioinformatics/btu663.

  • Chao Liu, Sriganesh Srihari, Kim-Anh Le Cao, Georgia Chenevix-Trench, Peter T Simpson, Mark A Ragan, Kum Kum Khanna, K. Le-Cao. A fine-scale dissection of the DNA double-strand break repair machinery and its implications for breast cancer therapy. Nucleic Acids Research, 42, 6106-6127, 2014. doi: 10.1093/nar/gku284.

  • KH Haynes, T Cuddihy, K Le Cao, L Bradbury, MA Brown, GP Thomas, K. Le-Cao. RNA SEQUENCING IN ANKYLOSING SPONDYLITIS IDENTIFIES A NOVEL DISEASE-SPECIFIC TRANSCRIPTOME AND SPLICE VARIANTS. CLINICAL AND EXPERIMENTAL RHEUMATOLOGY, 32, 821-822, 2014.

  • Soi-Cheng Law, Hendrik Nel, Ahmed Mehdi, Kim-Anh Le Cao, Ranjeny Thomas, K. Le-Cao. Multiple Mechanisms of Tolerance Characterize the Immune Response to Autologous Modified Dendritic Cells Exposed to Citrullinated Peptides in Patients with Rheumatoid Arthritis.. ARTHRITIS & RHEUMATOLOGY, 66, S422 (1pp), 2014.

  • Kim-Anh Le Cao, Florian Rohart, Leo McHugh, Othmar Korn, Christine A Wells, KA Lê Cao, K. Le-Cao. YuGene: a simple approach to scale gene expression data derived from different platforms for integrated analyses.. Genomics, 103, 239-251, 2014. doi: 10.1016/j.ygeno.2014.03.001.

  • Samer MI Hussein, Mira C Puri, Peter D Tonge, Marco Benevento, Andrew J Corso, Jennifer L Clancy, Rowland Mosbergen, Mira Li, Dong-Sung Lee, Nicole Cloonan, David LA Wood, Javier Munoz, Robert Middleton, Othmar Korn, Hardip R Patel, Carl A White, Jong-Yeon Shin, Maely E Gauthier, Kim-Anh Le Cao, Jong-Il Kim, Jessica C Mar, Nika Shakiba, William Ritchie, John EJ Rasko, Sean M Grimmond, Peter W Zandstra, Christine A Wells, Thomas Preiss, Jeong-Sun Seo, Albert JR Heck, Ian M Rogers, Andras Nagy, Kim-Anh Lê Cao, K. Le-Cao. Genome-wide characterization of the routes to pluripotency.. Nature, 516, 198-+, 2014. doi: 10.1038/nature14046.

  • D Clifford, BE Huang, KA Lê Cao, K. Le-Cao. The statistician's guide to a cracking good Christmas party. Significance, 11, 44-47, 2014. doi: 10.1111/j.1740-9713.2014.00784.x.

  • B Emma Huang, David Clifford, Kim-Anh Le Cao, Kim-Anh Lê Cao, K. Le-Cao. The surprising benefit of passive–aggressive behaviour at Christmas parties: being crowned king of the crackers. The Medical journal of Australia, 201, 694-696, 2014. doi: 10.5694/mja14.01392.

  • Oliver P Guenther, Heesun Shin, Raymond T Ng, W Robert McMaster, Bruce M McManus, Paul A Keown, Scott J Tebbutt, Kim-Anh Le Cao, Oliver P Günther, Kim-Anh Lê Cao, K. Le-Cao. Novel multivariate methods for integration of genomics and proteomics data: applications in a kidney transplant rejection study.. Omics : a journal of integrative biology, 18, 682-695, 2014. doi: 10.1089/omi.2014.0062.

  • H Moon, CS Lee, KL Inder, S Sharma, E Choi, DM Black, K-A Le Cao, C Winterford, JI Coward, MT Ling, DJ Craik, RG Parton, PJ Russell, MM Hill, K-A Lê Cao, Australian Prostate Cancer BioResource, K. Le-Cao. PTRF/cavin-1 neutralizes non-caveolar caveolin-1 microdomains in prostate cancer.. Oncogene, 33, 3561-3570, 2014. doi: 10.1038/onc.2013.315.

  • Arthur Tenenhaus, Cathy Philippe, Vincent Guillemot, Kim-Anh Le Cao, Jacques Grill, Vincent Frouin, K. Le-Cao. Variable selection for generalized canonical correlation analysis.. Biostatistics (Oxford, England), 15, 569-583, 2014. doi: 10.1093/biostatistics/kxu001.

  • F Dost, K Le Cao, PJ Ford, C Ades, CS Farah, K Lê Cao, K. Le-Cao. Malignant transformation of oral epithelial dysplasia: a real-world evaluation of histopathologic grading.. Oral surgery, oral medicine, oral pathology and oral radiology, 117, 343-352, 2014. doi: 10.1016/j.oooo.2013.09.017.

  • Fatima Dost, Kim-Anh Le Cao, Pauline J Ford, Camile S Farah, Kim-Anh Lê Cao, K. Le-Cao. A retrospective analysis of clinical features of oral malignant and potentially malignant disorders with and without oral epithelial dysplasia.. Oral surgery, oral medicine, oral pathology and oral radiology, 116, 725-733, 2013. doi: 10.1016/j.oooo.2013.08.005.

  • Daniel M Hohenhaus, Kolja Schaale, Kim-Anh Le Cao, Vernon Seow, Abishek Iyer, David P Fairlie, Matthew J Sweet, K. Le-Cao. An mRNA atlas of G protein-coupled receptor expression during primary human monocyte/macrophage differentiation and lipopolysaccharide-mediated activation identifies targetable candidate regulators of inflammation.. Immunobiology, 218, 1345-1353, 2013. doi: 10.1016/j.imbio.2013.07.001.

  • R Patrick, K Cao, M. Davis, B Kobe, M Boden, M Bodén, K. Le-Cao. Mapping the stabilome: a novel computational method for classifying metabolic protein stability.. BMC systems biology, 6, 60, 2012. doi: 10.1186/1752-0509-6-60.

  • Ignacio Gonzalez, Kim-Anh Le Cao, Melissa J Davis, Sebastien Dejean, Ignacio González, Sébastien Déjean, K. Le-Cao. Visualising associations between paired ‘omics’ data sets. BioData mining, 5, 19 (23pp), 2012. doi: 10.1186/1756-0381-5-19.

  • Kate Schroder, Katharine M Irvine, Martin S Taylor, Nilesh J Bokil, Kim-Anh Le Cao, Kelly-Anne Masterman, Larisa I Labzin, Colin A Semple, Ronan Kapetanovic, Lynsey Fairbairn, Altuna Akalin, Geoffrey J Faulkner, John Kenneth Baillie, Milena Gongora, Carsten O Daub, Hideya Kawaji, Geoffrey J McLachlan, Nick Goldman, Sean M Grimmond, Piero Carninci, Harukazu Suzuki, Yoshihide Hayashizaki, Boris Lenhard, David A Hume, Matthew J Sweet, K. Le-Cao. Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages.. Proceedings of the National Academy of Sciences of the United States of America, 109, E944-E953, 2012. doi: 10.1073/pnas.1110156109.

  • Fangzhou Yao, Jeff Coquery, Kim-Anh Le Cao, Kim-Anh Lê Cao, K. Le-Cao. Independent Principal Component Analysis for biologically meaningful dimension reduction of large biological data sets.. BMC bioinformatics, 13, 24 (15pp), 2012. doi: 10.1186/1471-2105-13-24.

  • Barbara E Lingwood, Alexandra M Henry, Amanda-Mei Fullerton, Robin H Mortimer, Paul B Colditz, Kim-Anh Le Cao, Leonie K Callaway, Kim-Anh Lê Cao, K. Le-Cao. Determinants of body fat in infants of women with gestational diabetes mellitus differ with fetal sex.. Diabetes care, 34, 2581-2585, 2011. doi: 10.2337/dc11-0728.

  • G BALCONI, E ANGELI, R NESSI, L DEFLAVIIS, L de Flaviis, K. Le-Cao. Ultrasonographic evaluation of peyronie’s disease. Urologic radiology, 10, 85-88, 1988. doi: 10.1007/BF02926543.