Publications

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  • Stefano Mangiola, Ramyar Molania, Ruining Dong, Maria A Doyle, A. Papenfuss. tidybulk: an R tidy framework for modular transcriptomic data analysis.. Genome Biology, 22, 42 (15pp), 2021. doi: 10.1186/s13059-020-02233-7.

  • Gerry Tonkin-Hill, Shazia Ruybal-Pesántez, Kathryn E Tiedje, Virginie Rougeron, Michael F Duffy, Sedigheh Zakeri, Tepanata Pumpaibool, Pongchai Harnyuttanakorn, OraLee H Branch, Lastenia Ruiz-Mesía, Thomas S Rask, Franck Prugnolle, A. Papenfuss, Y. Chan, Karen P Day. Evolutionary analyses of the major variant surface antigen-encoding genes reveal population structure of Plasmodium falciparum within and between continents.. PLoS genetics, 17, e1009269 (26pp), 2021. doi: 10.1371/journal.pgen.1009269.

  • Bhupinder Pal, Y. Chen, Francois Vaillant, Bianca D Capaldo, Rachel Joyce, Xiaoyu Song, Vanessa L Bryant, Jocelyn S Penington, Leon Di Stefano, Nina Tubau Ribera, Stephen Wilcox, Gregory B Mann, A. Papenfuss, Geoffrey J Lindeman, G. Smyth, Jane E Visvader, kConFab. A single?cell RNA expression atlas of normal, preneoplastic and tumorigenic states in the human breast. The EMBO journal, 40, e107333 (23pp), 2021. doi: 10.15252/embj.2020107333.

  • Ismael A Vergara, Christopher P Mintoff, Shahneen Sandhu, L. McIntosh, Richard J Young, Stephen Q Wong, Andrew Colebatch, D. Cameron, Julia Lai Kwon, Rory Wolfe, Angela Peng, Jason Ellul, Xuelin Dou, Clare Fedele, Samantha Boyle, Gisela Mir Arnau, Jeanette Raleigh, Athena Hatzimihalis, Pacman Szeto, Jennifer Mooi, Daniel S Widmer, Phil F Cheng, Valerie Amann, Reinhard Dummer, Nicholas Hayward, James Wilmott, Richard A Scolyer, Raymond J Cho, David Bowtell, Heather Thorne, Kathryn Alsop, Stephen Cordner, Noel Woodford, Jodie Leditschke, Sarah-Jane Dawson, Grant A McArthur, Graham J Mann, Mitchell P Levesque, A. Papenfuss, Mark Shackleton, Patricia O’Brien. Evolution of late-stage metastatic melanoma is dominated by aneuploidy and whole genome doubling.. Nature communications, 12, 1434 (15pp), 2021. doi: 10.1038/s41467-021-21576-8.

  • Michela L Mitchell, Gerry Q Tonkin-Hill, Rodrigo A Morales, Anthony W Purcell, A. Papenfuss, Raymond S Norton. Tentacle Transcriptomes of the Speckled Anemone (Actiniaria: Actiniidae: Oulactis sp.): Venom-Related Components and Their Domain Structure.. Marine biotechnology (New York, N.Y.), 207-219, 2020. doi: 10.1007/s10126-020-09945-8.

  • Marek Cmero, Ke Yuan, Cheng Soon Ong, Jan Schröder, PCAWG Evolution and Heterogeneity Working Group, Niall M Corcoran, A. Papenfuss, Christopher M Hovens, Florian Markowetz, Geoff Macintyre, PCAWG Consortium, Jan Schroeder, DJ Adams, P Anur, R Beroukhim, PC Boutros, DDL Bowtell, PJ Campbell, S Cao, EL Christie, Y Cun, KJ Dawson, J Demeulemeester, SC Dentro, AG Deshwar, N Donmez, RM Drews, R Eils, Y Fan, MW Fittall, DW Garsed, M Gerstung, G Getz, S Gonzalez, G Ha, K Haase, M Imielinski, L Jerman, Y Ji, C Jolly, K Kleinheinz, J Lee, H Lee-Six, I Leshchiner, D Livitz, S Malikic, I Martincorena, TJ Mitchell, QD Morris, V Mustonen, L Oesper, M Peifer, M Peto, BJ Raphael, D Rosebrock, Y Rubanova, SC Sahinalp, A Salcedo, M Schlesner, SE Schumacher, S Sengupta, R Shi, SJ Shin, PT Spellman, O Spiro, LD Stein, M Tarabichi, P Van Loo, S Vembu, I Vázquez-García, W Wang, DC Wedge, DA Wheeler, JA Wintersinger, TP Yang, X Yao, K Yu, H. Zhu. Inferring structural variant cancer cell fraction.. Nature communications, 11, 730 (15pp), 2020. doi: 10.1038/s41467-020-14351-8.

  • Owen WJ Prall, Violeta Nastevski, Huiling Xu, Christopher RE McEvoy, Joep HA Vissers, David J Byrne, Elena Takano, Satwica Yerneni, Sarah Ellis, Thomas Green, Catherine A Mitchell, William K Murray, Clare L Scott, Sean M Grimmond, Oliver Hofmann, A. Papenfuss, Damien Kee, Andrew Fellowes, Ian S Brown, Gregory Miller, M Priyanthi Kumarasinghe, Aurel Perren, Christopher B Nahm, Anubhav Mittal, Jaswinder Samra, Mahsa Ahadi, Stephen B Fox, Angela Chou, Anthony J Gill. RAF1 rearrangements are common in pancreatic acinar cell carcinomas.. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc, 1811-1821, 2020. doi: 10.1038/s41379-020-0545-9.

  • Arcadi Cipponi, David L Goode, Justin Bedo, Mark J McCabe, Marina Pajic, David R Croucher, Alvaro Gonzalez Rajal, Simon R Junankar, Darren N Saunders, Pavel Lobachevsky, A. Papenfuss, Danielle Nessem, Max Nobis, Sean C Warren, Paul Timpson, Mark Cowley, Ana C Vargas, Min R Qiu, Daniele G Generali, Shivakumar Keerthikumar, Uyen Nguyen, Niall M Corcoran, Georgina V Long, Jean-Yves Blay, David M Thomas. MTOR signaling orchestrates stress-induced mutagenesis, facilitating adaptive evolution in cancer.. Science (New York, N.Y.), 368, 1127-+, 2020. doi: 10.1126/science.aau8768.

  • PJ Tomezsko, VDA Corbin, P Gupta, H Swaminathan, M Glasgow, S Persad, MD Edwards, L. McIntosh, A. Papenfuss, A Emery, R Swanstrom, T Zang, TCT Lan, P Bieniasz, DR Kuritzkes, A Tsibris, S Rouskin. Determination of RNA structural diversity and its role in HIV-1 RNA splicing. Nature, 582, 438-+, 2020. doi: 10.1038/s41586-020-2253-5.

  • Amanda L Patchett, Tim HH Coorens, Jocelyn Darby, Richard Wilson, Matthew J McKay, Karthik S Kamath, Alan Rubin, Matthew Wakefield, L. McIntosh, Stefano Mangiola, Ruth J Pye, Andrew S Flies, Lynn M Corcoran, A Bruce Lyons, Gregory M Woods, Elizabeth P Murchison, A. Papenfuss, Cesar Tovar. Two of a kind: transmissible Schwann cell cancers in the endangered Tasmanian devil (Sarcophilus harrisii).. Cellular and molecular life sciences : CMLS, 77, 1847-1858, 2020. doi: 10.1007/s00018-019-03259-2.

  • X. Zhang, Lie Yang, Ismael Vergara, Pacman Szeto, A. Papenfuss, Mark Shackleton, Kieran Harvey. The Hippo pathway in melanoma.. MOLECULAR CANCER RESEARCH, 18, 13 (1pp), 2020.

  • X. Zhang, Lie Yang, Pacman Szeto, Gamze Kuser Abali, Aishwarya Kulkarni, Kaushalya Amarasinghe, Jason Li, Ismael A Vergara, Ramyar Molania, A. Papenfuss, Catriona McLean, Mark Shackleton, Kieran F Harvey. The Hippo pathway oncoprotein YAP promotes melanoma cell invasion and spontaneous metastasis.. Oncogene, 39, 5267-5281, 2020. doi: 10.1038/s41388-020-1362-9.

  • Leon Di Stefano, A. Papenfuss, Leon Di Stefano. Unifying package managers, workflow engines, and containers: Computational reproducibility with BioNix.. Gigascience, 9, 1-12, 2020. doi: 10.1093/gigascience/giaa121.

  • Emily J Lelliott, Stefano Mangiola, Kelly M Ramsbottom, Magnus Zethoven, Lydia Lim, Peter KH Lau, Amanda J Oliver, Luciano G Martelotto, Laura Kirby, Claire Martin, Riyaben P Patel, Alison Slater, Carleen Cullinane, A. Papenfuss, Nicole M Haynes, Grant A McArthur, Jane Oliaro, Karen E Sheppard. Combined BRAF, MEK and CDK4/6 inhibition depletes intratumoral immune-potentiating myeloid populations in melanoma.. Cancer immunology research, 136-146, 2020. doi: 10.1158/2326-6066.CIR-20-0401.

  • J. Tang, Scott A Chisholm, Lee M Yeoh, Paul R Gilson, A. Papenfuss, Karen P Day, Michaela Petter, Michael F Duffy. Histone modifications associated with gene expression and genome accessibility are dynamically enriched at Plasmodium falciparum regulatory sequences.. Epigenetics and Chromatin, 13, 50 (25pp), 2020. doi: 10.1186/s13072-020-00365-5.

  • PKH Lau, B Feran, L Smith, A Lasocki, R Molania, A Weppler, C Angel, D Kee, P Bhave, B Lee, HX Aw Yeang, I Vergara, D Kok, K Drummond, P Neeson, K Sheppard, A. Papenfuss, S Sandhu, G McArthur. Progression of BRAF mutant CNS metastases are associated with a transcriptional network bearing similarities with the innate PD-1 resistant signature (IPRES). Annals of Oncology, 31, S733 (1pp), 2020. doi: 10.1016/j.annonc.2020.08.1203.

  • Damien Kee, Olga Kondrashova, Sumitra Ananda, Michael Paul Brown, Paul Andrew Cohen, Andrew Dean, Jayesh Desai, Andrew Fellowes, Stephen B Fox, Alison Hadley, Dianne Lindsay, Linda R Mileshkin, Owen WJ Prall, Hamish Scott, David Morgan Thomas, Richard Vines, Nic Waddell, A. Papenfuss. NOMINATOR: Feasibility of genomic testing of rare cancers to match cancer to treatment.. JOURNAL OF CLINICAL ONCOLOGY, 38, 103 (2pp), 2020.

  • Damien Kee, Olga Kondrashova, Sumitra Ananda, Michael Paul Brown, Paul Andrew Cohen, Andrew Dean, Jayesh Desai, Andrew Fellowes, Stephen B Fox, Alison Hadley, Dianne Lindsay, Linda R Mileshkin, Owen WJ Prall, Hamish Scott, David Morgan Thomas, Richard Vines, Nic Waddell, A. Papenfuss. NOMINATOR: Feasibility of genomic testing of rare cancers to match cancer to treatment.. Journal of Clinical Oncology, 38, 103, 2020. doi: 10.1200/jco.2020.38.15_suppl.103.

  • Angela Pizzolla, Simon Keam, Ismael Vergara, Franco Caramia, Minyu Wang, Nikolce Kocovski, Nguyen ThuNgoc, Sean Macdonald, Daniela Tantalo, Pasquale Petrone, Han Xian Aw Yeang, David Gyorki, Alison Weppler, George Au-Yeung, Shahneen Sandhu, Maurizio Perdicchio, Grant McArthur, A. Papenfuss, Paul Neeson, ThuNgoc Nguyen. CD8+TISSUE-RESIDENT MEMORY T CELLS ARE TUMOUR REACTIVE AND INCREASE AFTER IMMUNOTHERAPY IN A CASE OF METASTATIC MUCOSAL MELANOMA. Journal for ImmunoTherapy of Cancer, 8, A333 (1pp), 2020. doi: 10.1136/jitc-2020-SITC2020.0548.

  • Pasi K Korhonen, Robin B Gasser, Guangxu Ma, Tao Wang, Andreas J Stroehlein, Neil D Young, Ching-Seng Ang, Deepani D Fernando, Hieng C Lu, Sara Taylor, Simone L Reynolds, E. Mofiz, Shivashankar H Najaraj, Harsha Gowda, Anil Madugundu, Santosh Renuse, Deborah Holt, Akhilesh Pandey, A. Papenfuss, Katja Fischer. High-quality nuclear genome for sarcoptes Scabiei—A critical resource for a neglected parasite. PLoS neglected tropical diseases, 14, e0008720-20, 2020. doi: 10.1371/journal.pntd.0008720.

  • X. Zhang, Lie Yang, Ismael Vergara, Pacman Szeto, A. Papenfuss, Mark Shackleton, Kieran Harvey. The Hippo pathway in melanoma. Oral Presentations - Invited Abstracts, 29, ia03 (2pp), 2020. doi: 10.1158/1557-3125.HIPPO19-IA03.

  • D Merino, TS Weber, A Serrano, F Vaillant, K Liu, B Pal, L Di Stefano, J Schreuder, D Lin, Y. Chen, ML Asselin-Labat, TN Schumacher, D. Cameron, G. Smyth, A. Papenfuss, GJ Lindeman, JE Visvader, SH Naik. Barcoding reveals complex clonal behavior in patient-derived xenografts of metastatic triple negative breast cancer.. Nature communications, 10, 766 (12pp), 2019. doi: 10.1038/s41467-019-08595-2.

  • X. Zhang, J. Tang, Ismael A Vergara, Pacman Szeto, Lie Yang, Christopher Mintoff, Andrew Colebatch, L. McIntosh, Katrina A Mitchell, Evangeline Shaw, Helen Rizos, Georgina V Long, Nicholas Hayward, Grant A McArthur, A. Papenfuss, Kieran F Harvey, Mark Shackleton. Somatic hypermutation of the YAP oncogene in a human cutaneous melanoma.. Molecular cancer research : MCR, 1435-1449, 2019. doi: 10.1158/1541-7786.MCR-18-0407.

  • Anna S Trigos, Richard B Pearson, A. Papenfuss, David L Goode. Somatic mutations in early metazoan genes disrupt regulatory links between unicellular and multicellular genes in cancer.. eLife, 8, 1-28, 2019. doi: 10.7554/eLife.40947.

  • Michela L Mitchell, Thomas Shafee, A. Papenfuss, Raymond S Norton. Evolution of cnidarian trans-defensins: Sequence, structure and exploration of chemical space.. Proteins, 551-560, 2019. doi: 10.1002/prot.25679.

  • Daniel Esposito, Jochen Weile, Jay Shendure, Lea Starita, A. Papenfuss, Frederick Roth, Douglas Fowler, Alan Rubin. An open-source platform to distribute and interpret data from multiplexed assays of variant effect. 555797, Cold Spring Harbor Laboratory, 2019. doi: 10.1101/555797.

  • Yuanyuan Cheng, Mariano Makara, Emma Peel, Samantha Fox, A. Papenfuss, Katherine Belov. Tasmanian devils with contagious cancer exhibit a constricted T-cell repertoire diversity.. Communications biology, 2, 99 (9pp), 2019. doi: 10.1038/s42003-019-0342-5.

  • Stefano Mangiola, Ryan Stuchbery, Patrick J McCoy, Ken Chow, Natalie Kurganovs, Michael Kerger, A. Papenfuss, Christopher M Hovens, Niall M Corcoran. Androgen deprivation therapy promotes an obesity-like microenvironment in periprostatic fat.. Endocrine connections, 547-558, 2019. doi: 10.1530/EC-19-0029.

  • Ki Wook Kim, Digby W Allen, Thomas Briese, Jennifer J Couper, Simon C Barry, Peter G Colman, Andrew M Cotterill, Elizabeth A Davis, Lynne C Giles, Leonard C Harrison, Mark Harris, Aveni Haynes, Jessica L Horton, Sonia R Isaacs, Komal Jain, Walter Ian Lipkin, Grant Morahan, Claire Morbey, Ignatius CN Pang, A. Papenfuss, Megan AS Penno, Richard O Sinnott, Georgia Soldatos, Rebecca L Thomson, Peter J Vuillermin, John M Wentworth, Marc R Wilkins, William D Rawlinson, Maria E Craig, ENDIA Study Group. Distinct Gut Virome Profile of Pregnant Women With Type 1 Diabetes in the ENDIA Study.. Open forum infectious diseases, 6, ofz025 (8pp), 2019. doi: 10.1093/ofid/ofz025.

  • D Merino, TS Weber, A Serrano, F Vaillant, K Liu, B Pal, L Di Stefano, J Schreuder, D Lin, Y. Chen, ML Asselin-Labat, TN Schumacher, D. Cameron, G. Smyth, A. Papenfuss, GJ Lindeman, JE Visvader, SH Naik. Publisher Correction: Barcoding reveals complex clonal behavior in patient-derived xenografts of metastatic triple negative breast cancer.. Nature communications, 10, 1945 (2pp), 2019. doi: 10.1038/s41467-019-09916-1.

  • John F Markham, Satwica Yerneni, Georgina L Ryland, Huei San Leong, Andrew Fellowes, Ella R Thompson, Wasanthi De Silva, A. Kumar, Richard Lupat, Jason Li, Jason Ellul, Stephen Fox, Michael Dickinson, A. Papenfuss, Piers Blombery. CNspector: a web-based tool for visualisation and clinical diagnosis of copy number variation from next generation sequencing.. Scientific reports, 9, 6426 (9pp), 2019. doi: 10.1038/s41598-019-42858-8.

  • Gerry Tonkin-Hill, Shazia Ruybal-Pesantez, Kathryn E Tiedje, Virginie Rougeron, Sedigheh Zakeri, Tepanata Pumpaibool, Pingchai Harnyuttanakorn, OraLee H Branch, Lastenia Ruiz-Mesia, Michael F Duffy, Thomas S Rask, Franck Prugnolle, Y. Chan, A. Papenfuss, Karen P Day. GLOBAL STRUCTURE OF THE VAR GENES ENCODING THE MAJOR VARIANT SURFACE ANTIGEN OF PLASMODIUM FALCIPARUM. AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE, 101, 502-503, 2019.

  • John Markham, Satwica Yerneni, Georgina L Ryland, Andrew Fellowes, Ella Thompson, Stephen Fox, David Alan Westerman, Michael Dickinson, A. Papenfuss, Piers Blombery. Cnspectorx - Copy Number Assessment at a Genome Level from Targeted Sequence Data Optimized for Hematological Malignancy. Blood, 134, 3378 (3pp), 2019. doi: 10.1182/blood-2019-125471.

  • G. Tonkin-Hill, Leily Trianty, Rintis Noviyanti, Hanh HT Nguyen, Boni F Sebayang, Daniel A Lampah, Jutta Marfurt, Simon A Cobbold, Janavi S Rambhatla, Malcolm J McConville, Stephen J Rogerson, Graham Brown, Karen P Day, Ric N Price, Nicholas M Anstey, A. Papenfuss, Michael F Duffy. The Plasmodium falciparum transcriptome in severe malaria reveals altered expression of genes involved in important processes including surface antigen–encoding var genes. PLoS biology, 16, e2004328 (40pp), 2018. doi: 10.1371/journal.pbio.2004328.

  • E. Chan, D. Cameron, DC Petersen, RJ Lyons, BF Baldi, A. Papenfuss, D. Thomas, VM Hayes. Optical mapping reveals a higher level of genomic architecture of chained fusions in cancer. Genome Research, 28, 726-738, 2018. doi: 10.1101/gr.227975.117.

  • Deepani D Fernando, Simone L Reynolds, Martha Zakrzewski, E. Mofiz, A. Papenfuss, Deborah Holt, Katja Fischer. Phylogenetic relationships, stage-specific expression and localisation of a unique family of inactive cysteine proteases in Sarcoptes scabiei. Parasites and Vectors, 11, 301 (12pp), 2018. doi: 10.1186/s13071-018-2862-0.

  • Ana Janic, Liz J Valente, Matthew J Wakefield, L. di Stefano, Liz Milla, Stephen Wilcox, H. Yang, Lin Tai, Cassandra J Vandenberg, Andrew J Kueh, Shinsuke Mizutani, Margs S Brennan, Robyn L Schenk, Lisa M Lindqvist, A. Papenfuss, Andreas Strasser, Marco J Herold. DNA repair processes are critical mediators of p53-dependent tumor suppression.. Nature medicine, 947-+, 2018. doi: 10.1038/s41591-018-0043-5.

  • S Mangiola, A. Papenfuss, K Chow, N Corcoran, C Hovens. Differential tissue composition analysis from whole tissue gene expression. BJU INTERNATIONAL, 122, 29 (1pp), 2018.

  • Hazel Tye, Chien-Hsiung Yu, Lisa A Simms, Marcel R de Zoete, Man Lyang Kim, Martha Zakrzewski, Jocelyn S Penington, Cassandra R Harapas, Fernando Souza-Fonseca-Guimaraes, Leesa F Wockner, Adele Preaudet, Lisa A Mielke, Stephen A Wilcox, Yasunori Ogura, Sinead C Corr, Komal Kanojia, Konstantinos A Kouremenos, David P De Souza, Malcolm J McConville, Richard A Flavell, Motti Gerlic, Benjamin T Kile, A. Papenfuss, Tracy L Putoczki, Graham L Radford-Smith, Seth L Masters. NLRP1 restricts butyrate producing commensals to exacerbate inflammatory bowel disease.. Nature communications, 9, 3728 (11pp), 2018. doi: 10.1038/s41467-018-06125-0.

  • TL Leong, V Gayevskiy, DP Steinfort, MR De Massy, A Gonzalez-Rajal, KD Marini, E Stone, V Chin, A Havryk, M Plit, LB Irving, BR Jennings, RA McCloy, WSN Jayasekara, M Alamgeer, V Boolell, A Field, PA Russell, B Kumar, DJ Gough, A Szczepny, V Ganju, FJ Rossello, JE Cain, A. Papenfuss, ML Asselin-Labat, MJ Cowley, DN Watkins. Deep multi-region whole-genome sequencing reveals heterogeneity and gene-by-environment interactions in treatment-naive, metastatic lung cancer.. Oncogene, 1661-1675, 2018. doi: 10.1038/s41388-018-0536-1.

  • JHA Vissers, F Froldi, J Schröder, A. Papenfuss, LY Cheng, KF Harvey. The Scalloped and Nerfin-1 Transcription Factors Cooperate to Maintain Neuronal Cell Fate.. Cell reports, 25, 1561-+, 2018. doi: 10.1016/j.celrep.2018.10.038.

  • Anna Trigos, Rick Pearson, A. Papenfuss, David Goode. Somatic mutations in early metazoan genes disrupt regulatory links between unicellular and multicellular genes in cancer. 388363, 2018. doi: 10.1101/388363.

  • S Mangiola, A. Papenfuss, K Chow, N Corcoran, C Hovens. Interplay among cell types in the tumour microenvironment reveals the activation of key hallmarks in prostate cancer. BJU INTERNATIONAL, 122, 35 (1pp), 2018.

  • ORB Thomas, SE Swearer, EA Kapp, P Peng, GQ Tonkin-Hill, A. Papenfuss, A Roberts, P Bernard. The inner ear proteome of fish. . The FEBS journal, 66-81, 2018. doi: 10.1111/febs.14715.

  • Alan F Rubin, Daniel Esposito, Jochen Weile, Frederick P Roth, Douglas M Fowler, A. Papenfuss. Computational Tools for Deep Mutational Scanning. PROTEIN SCIENCE, 27, 51 (1pp), 2018.

  • Katja Fischer, Charlotte Bernigaud, Martha Zakrzewski, Pearl Swe, A. Papenfuss, E. Mofiz, Francoise Botterel, M Karmarkar, Deborah Holt, Bart Currie, Olivier Chosidow. THE IMPACT OF SCABIES ON THE HEALTHY HUMAN SKIN MICROBIOTA. AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE, 99, 489 (1pp), 2018.

  • Anna S Trigos, Richard B Pearson, A. Papenfuss, David L Goode. How the evolution of multicellularity set the stage for cancer.. British journal of cancer, 118, 145-152, 2018. doi: 10.1038/bjc.2017.398.

  • Alan F Rubin, Hannah Gelman, Nathan Lucas, Sandra M Bajjalieh, A. Papenfuss, Terence P Speed, Douglas M Fowler. Correction: A statistical framework for analyzing deep mutational scanning data [Genome Biol., 18, 1, (2017) (150)] DOI: 10.1186/s13059-017-1272-5. Genome biology, 19, 17 (4pp), 2018. doi: 10.1186/s13059-018-1391-7.

  • Luis L Lara-Gonzalez, Sherene Loi, D. Ferrari, A. Papenfuss, David L Goode. Reconstructing the evolutionary paths of BIG 1-98. CANCER RESEARCH, 78, 2018.

  • Jocelyn Sietsma Penington, Megan AS Penno, Katrina M Ngui, Nadim J Ajami, Alexandra J Roth-Schulze, Stephen A Wilcox, Esther Bandala-Sanchez, John M Wentworth, Simon C Barry, Cheryl Y Brown, Jennifer J Couper, Joseph F Petrosino, A. Papenfuss, Leonard C Harrison, ENDIA Study Group*, PG Colman, A Cotterill, ME Craig, EA Davis, M Harris, A Haynes, L Giles, G Morahan, C Morbey, WD Rawlinson, RO Sinnott, G Soldatos, RL Thomson, PJ Vuillermin. Influence of fecal collection conditions and 16S rRNA gene sequencing at two centers on human gut microbiota analysis.. Scientific reports, 8, 4386 (10pp), 2018. doi: 10.1038/s41598-018-22491-7.

  • AL Patchett, R Wilson, JC Charlesworth, LM Corcoran, A. Papenfuss, AB Lyons, GM Woods, C Tovar. Transcriptome and proteome profiling reveals stress-induced expression signatures of imiquimod-treated Tasmanian devil facial tumor disease (DFTD) cells. Oncotarget, 9, 15895-15914, 2018. doi: 10.18632/oncotarget.24634.

  • GY Ho, O Kondrashova, C Vandenberg, E Kyran, E Lieschke, V Heong, M Milevskiy, A. Papenfuss, J Schroeder, J Weroha, M Dawson, D Bowtell, H Barker, M Wakefield, C Scott. TARGETING MYCN OVER-EXPRESSION WITH BRD4 INHIBITION IN THE PROLIFERATIVE C5 SUBTYPE OF HIGH GRADE SEROUS OVARIAN CANCER (HGSOC). INTERNATIONAL JOURNAL OF GYNECOLOGICAL CANCER, 28, 159 (1pp), 2018.

  • D. Cameron, Jan Schroeder, Jocelyn Sietsma Penington, Hongdo Do, Ramyar Molania, Alexander Dobrovic, Terence Speed, A. Papenfuss. GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly. 2017. doi: 10.1101/110387.

  • Marek Cmero, Cheng Soon Ong, Ke Yuan, Jan Schröder, Kangbo Mo, Niall Corcoran, A. Papenfuss, Christopher Hovens, Florian Markowetz, Geoff Macintyre, PCAWG Evolution and Heterogeneity Working Group. SVclone: inferring structural variant cancer cell fraction. 2017. doi: 10.1101/172486.

  • Stephen Q Wong, Jeanette M Raleigh, Jason Callahan, Ismael A Vergara, Sarah Ftouni, Athena Hatzimihalis, Andrew J Colebatch, Jason Li, Timothy Semple, Kenneth Doig, Christopher Mintoff, Devbarna Sinha, Paul Yeh, Maria Joao Silva, Kathryn Alsop, Heather Thorne, David D Bowtell, David E Gyorki, Gisela Mir Arnau, Carleen Cullinane, Damien Kee, Benjamin Brady, Fergal Kelleher, Mark A Dawson, A. Papenfuss, Mark Shackleton, Rodney J Hicks, Grant A McArthur, Shahneen Sandhu. Circulating Tumor DNA Analysis and Functional Imaging Provide Complementary Approaches for Comprehensive Disease Monitoring in Metastatic Melanoma. JCO Precision Oncology, 1, 1-14, 2017. doi: 10.1200/PO.16.00009.

  • Kenneth D Doig, Jason Ellul, Andrew Fellowes, Ella R Thompson, Georgina Ryland, Piers Blombery, A. Papenfuss, Stephen B Fox. Canary: an atomic pipeline for clinical amplicon assays.. BMC bioinformatics, 18, 555 (7pp), 2017. doi: 10.1186/s12859-017-1950-z.

  • Marek Cmero, Cheng Soon-Ong, Ke Yuan, Jan Schroder, Kangbo Mo, Niall M Corcoran, A. Papenfuss, Chris M Hovens, Florian Markowetz, Geoff Macintyre. SVclone: inference of cancer cell fraction using structural variation. BJU INTERNATIONAL, 120, 21 (1pp), 2017.

  • Lucille C Rankin, Mathilde JH Girard-Madoux, Cyril Seillet, Lisa A Mielke, Yann Kerdiles, Aurore Fenis, Elisabeth Wieduwild, Tracy Putoczki, Stanislas Mondot, Olivier Lantz, Dieter Demon, A. Papenfuss, G. Smyth, Mohamed Lamkanfi, Sebastian Carotta, Jean-Christophe Renauld, Wei Shi, Sabrina Carpentier, Tim Soos, Christopher Arendt, Sophie Ugolini, Nicholas D Huntington, Gabrielle T Bez, Eric Vivier, GT Belz. Complementarity and redundancy of IL-22-producing innate lymphoid cells. Nature Immunology, 17, 179-186, 2016. doi: 10.1038/ni.3332.

  • Jared Mamrot, Roxane Legaie, Stacey Ellery, Trevor Wilson, David Gardner, D. Walker, Peter Temple-Smith, A. Papenfuss, Hayley Dickinson. De novo transcriptome assembly for the spiny mouse (Acomys cahirinus). 2016. doi: 10.1101/076067.

  • Alan Rubin, Nathan Lucas, Sandra Bajjalieh, A. Papenfuss, Terence Speed, Douglas Fowler. Enrich2: a statistical framework for analyzing deep mutational scanning data. 2016. doi: 10.1101/075150.

  • AJ Colebatch, L di Stefano, SQ Wong, PJ Waring, A Dobrovic, GA McArthur, A. Papenfuss. Clustered somatic mutations are frequent in transcription factor binding sites in melanoma and other cutaneous malignancies.. Pathology, 48 Suppl 1, S94, 2016. doi: 10.1016/j.pathol.2015.12.266.

  • J. Tang, X. Zhang, Ismael Vergara, A. Papenfuss, Kieran Harvey, Mark Shackleton. Abstract B157: YAP is a promising target in cutaneous melanoma. Target Identification and Validation, b157, 2015. doi: 10.1158/1535-7163.targ-15-b157.

  • Beata Ujvari, Anne-Maree Pearse, Sarah Peck, Collette Harmsen, Robyn Taylor, Stephen Pyecroft, Thomas Madsen, A. Papenfuss, Katherine Belov. Evolution of a contagious cancer: epigenetic variation in Devil Facial Tumour Disease.. Royal Society of London. Proceedings B. Biological Sciences, 280, 20121720 (8pp), 2013. doi: 10.1098/rspb.2012.1720.

  • Elizabeth P Murchison, Ole B Schulz-Trieglaff, Zemin Ning, Ludmil B Alexandrov, Markus J Bauer, Beiyuan Fu, Matthew Hims, Zhihao Ding, Sergii Ivakhno, Caitlin Stewart, Bee Ling Ng, Wendy Wong, Bronwen Aken, Simon White, Amber Alsop, Jennifer Becq, Graham R Bignell, R Keira Cheetham, William Cheng, Thomas R Connor, Anthony J Cox, Zhi-Ping Feng, Yong Gu, Russell J Grocock, Simon R Harris, Irina Khrebtukova, Zoya Kingsbury, Mark Kowarsky, Alexandre Kreiss, Shujun Luo, John Marshall, David J McBride, Lisa Murray, Anne-Maree Pearse, Keiran Raine, Isabelle Rasolonjatovo, Richard Shaw, Philip Tedder, Carolyn Tregidgo, Albert J Vilella, David C Wedge, Gregory M Woods, Niall Gormley, Sean Humphray, Gary Schroth, Geoffrey Smith, Kevin Hall, Stephen MJ Searle, Nigel P Carter, A. Papenfuss, P Andrew Futreal, Peter J Campbell, Fengtang Yang, David R Bentley, Dirk J Evers, Michael R Stratton. Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer.. Cell, 148, 780-791, 2012. doi: 10.1016/j.cell.2011.11.065.

  • Iris Tan, Leanne Mackin, Nancy Wang, A. Papenfuss, Colleen Elso, Michelle Ashton, Fiona Quirk, B. Phipson, M. Bahlo, T. Speed, G. Smyth, Grant Morahan, Thomas Brodnicki. Congenic mouse strains identify a novel gene for which allelic variation affects susceptibility to type 1 diabetes. Journal of Immunology, 186, 2011.

  • Lei Shong Lau, Daniel Fernandez Ruiz, Gayle M Davey, Tania F de Koning-Ward, A. Papenfuss, Francis R Carbone, Andrew G Brooks, Brendan S Crabb, William R Heath. Blood-stage plasmodium berghei infection generates a potent, specific CD8+ T-cell response despite residence largely in cells lacking MHC i processing machinery. The Journal of infectious diseases, 204, 1989-1996, 2011. doi: 10.1093/infdis/jir656.

  • Emily SW Wong, A. Papenfuss, Andreas Heger, Arthur L Hsu, Chris P Ponting, Robert D Miller, Jane C Fenelon, Marilyn B Renfree, Richard A Gibbs, Katherine Belov. Transcriptomic analysis supports similar functional roles for the two thymuses of the tammar wallaby.. BMC genomics, 12, 420 (12pp), 2011. doi: 10.1186/1471-2164-12-420.

  • Nathan Lawrentschuk, Fook T Lee, Gareth Jones, Angela Rigcpoulos, Angela Mountain, A. Papenfuss, Damien M Bolton, Ian D Davis, Andrew M Scott, Angela Rigopoulos. Investigation of hypoxia and carbonic anhydrase IX expression in a renal cell carcinoma xenograft model with oxygen tension measurements and ¹²⁴I-cG250 PET/CT.. Urologic oncology, 29, 411-420, 2011. doi: 10.1016/j.urolonc.2009.03.028.

  • Michael A Gorman, Alex D Uboldi, Peter J Walsh, Kher Shing Tan, Guido Hansen, Trevor Huyton, Hong Ji, Joan Curtis, Lukasz Kedzierski, A. Papenfuss, Con Dogovski, Matthew A Perugini, Richard J Simpson, Emanuela Handman, Michael W Parker. Crystal structure of theLeishmania majorMIX protein: A scaffold protein that mediates protein-protein interactions. Protein science : a publication of the Protein Society, 20, 1060-1068, 2011. doi: 10.1002/pro.631.

  • Charbel Darido, Smitha R Georgy, Tomasz Wilanowski, Sebastian Dworkin, Alana Auden, Quan Zhao, Gerhard Rank, Seema Srivastava, Moira J Finlay, A. Papenfuss, Pier Paolo Pandolfi, Richard B Pearson, Stephen M Jane. Targeting of the tumor suppressor GRHL3 by a miR-21-dependent proto-oncogenic network results in PTEN loss and tumorigenesis.. Cancer cell, 20, 635-648, 2011. doi: 10.1016/j.ccr.2011.10.014.

  • Marilyn B Renfree, A. Papenfuss, Janine E Deakin, James Lindsay, Thomas Heider, Katherine Belov, Willem Rens, Paul D Waters, Elizabeth A Pharo, Geoff Shaw, Emily Swwong, Christophe M Lefevre, Kevin R Nicholas, Yoko Kuroki, Matthew J Wakefield, Kyall R Zenger, Chenwei Wang, Malcolm Ferguson-Smith, Danielle Hickford, Hongshi Yu, Kirsty R Short, Hannah V Siddle, Stephen R Frankenberg, Keng Yih Chew, Brandon R Menzies, Jessica M Stringer, Shunsuke Suzuki, Timothy A Hore, Margaret L Delbridge, Amir Mohammadi, Nanette Y Schneider, Yanqiu Hu, Shafagh Al Nadaf, C. Wu, Zhi-Ping Feng, Benjamin G Cocks, Paul Flicek, Stephen MJ Searle, Susan Fairley, Kathryn Beal, Javier Herrero, Dawn M Carone, Sumio Sugano, Atsushi Toyoda, Yoshiyuki Sakaki, Shinji Kondo, Yuichiro Nishida, Shoji Tatsumoto, Ion Mandiou, Arthur Hsu, Kaighin A McColl, Benjamin Lansdell, George Weinstock, Elizabeth Kuczek, Annette McGrath, Peter Wilson, Artem Men, Mehlika Hazar-Rethinam, Allison Hall, John Davis, David Wood, Sarah Williams, Yogi Sundaravadan. Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development.. Genome biology, 12, R81 (25pp), 2011. doi: 10.1186/gb-2011-12-8-r81.

  • KT Tan, L Mackin, NW Wang, A. Papenfuss, C Elso, MPA Ashton, F Quirk, B. Phipson, M. Bahlo, T. Speed, G. Smyth, G Morahan, T Brodnicki. A recombination hotspot leads to sequence variability within a novel gene (AK005651) and contributes to type 1 diabetes susceptibility. Genome Research, 20, 1629-1638, 2010. doi: 10.1101/gr.101881.109.

  • Jacinta Caddy, Tomasz Wilanowski, Charbel Darido, Sebastian Dworkin, Stephen B Ting, Quan Zhao, Gerhard Rank, Alana Auden, Seema Srivastava, A. Papenfuss, Jennifer N Murdoch, Patrick O Humbert, Vishwas Parekh, Nidal Boulos, Thomas Weber, Jian Zuo, John M Cunningham, Stephen M Jane. Erratum to Epidermal Wound Repair Is Regulated by the Planar Cell Polarity Signaling Pathway [Developmental Cell, 19, 138-147, (2010)]. Developmental Cell, 19, 353 (1pp), 2010. doi: 10.1016/j.devcel.2010.08.003.

  • Jacinta Caddy, Tomasz Wilanowski, Charbel Darido, Sebastian Dworkin, Stephen B Ting, Quan Zhao, Gerhard Rank, Alana Auden, Seema Srivastava, A. Papenfuss, Jennifer N Murdoch, Patrick O Humbert, Nidal Boulos, Thomas Weber, Jian Zuo, John M Cunningham, Stephen M Jane, Vishwas Parekh. Epidermal wound repair is regulated by the planar cell polarity signaling pathway.. Developmental cell, 19, 138-147, 2010. doi: 10.1016/j.devcel.2010.06.008.

  • M Schmidt, M Rudolph, A. Papenfuss, M Friedrich, C Moehlenbrink, S Kaltenhaeuser, N Fuerstenau. REMOTE AIRPORT TRAFFIC CONTROL CENTER WITH AUGMENTED VISION VIDEO PANORAMA. 2009 IEEE/AIAA 28TH DIGITAL AVIONICS SYSTEMS CONFERENCE, VOLS 1-3, 1075-1089, 2009.

  • Marilyn B Renfree, A. Papenfuss, Geoff Shaw, Andrew J Pask. Eggs, embryos and the evolution of imprinting: insights from the platypus genome.. Reproduction, fertility, and development, 21, 935-942, 2009. doi: 10.1071/RD09092.

  • Hayley E Bullen, Christopher J Tonkin, Wai-Hong Tham, A. Papenfuss, Sven Gould, Alan F Cowman, Brendan S Crabb, Paul R Gilson. A novel family of apicomplexan glideosome-associated proteins with an inner membrane-anchoring role. The Journal of biological chemistry, 284, 25353-25363, 2009. doi: 10.1074/jbc.M109.036772.

  • Andrew J Pask, A. Papenfuss, Eleanor I Ager, Kaighin A Mccoll, Terence P Speed, Marilyn B Renfree. Analysis of the platypus genome suggests a transposon origin for mammalian imprinting.. Genome biology, 10, R1 (8pp), 2009. doi: 10.1186/gb-2009-10-1-r1.

  • Tania F de Koning-Ward, Anna Olivieri, Lucia Bertuccini, Andrew Hood, Francesco Silvestrini, Konstantinos Charvalias, Pedro Berzosa Diaz, Grazia Camarda, Terry F McElwain, A. Papenfuss, Julie Healer, Lucilla Baldassarri, Brendan S Crabb, Pietro Alano, Lisa C Ranford-Cartwright, Pedro Berzosa Díaz. The role of osmiophilic bodies and Pfg377 expression in female gametocyte emergence and mosquito infectivity in the human malaria parasite Plasmodium falciparum.. Molecular microbiology, 67, 278-290, 2008. doi: 10.1111/j.1365-2958.2007.06039.x.

  • Camilla M Whittington, A. Papenfuss, Paramjit Bansal, Allan M Torres, Emily SW Wong, Janine E Deakin, Tina Graves, Amber Alsop, Kyriena Schatzkamer, Colin Kremitzki, Chris P Ponting, Peter Temple-Smith, Wesley C Warren, Philip W Kuchel, Katherine Belov. Defensins and the convergent evolution of platypus and reptile venom genes.. Genome research, 18, 986-994, 2008. doi: 10.1101/gr.7149808.

  • Wesley C Warren, LaDeana W Hillier, Jennifer A Marshall Graves, Ewan Birney, Chris P Ponting, Frank Grutzner, Katherine Belov, Webb Miller, Laura Clarke, Asif T Chinwalla, Shiaw-Pyng Yang, Andreas Heger, Devin P Locke, Pat Miethke, Paul D Waters, Frederic Veyrunes, Lucinda Fulton, John Wallis, Xose S Puente, Carlos Lopez-Otin, Gonzalo R Ordonez, Evan E Eichler, L. Chen, Ze Cheng, Janine E Deakin, Amber Alsop, Katherine Thompson, Patrick Kirby, A. Papenfuss, Matthew J Wakefield, Tsviya Olender, Doron Lancet, Gavin A Huttley, Arian FA Smit, Andrew Pask, Peter Temple-Smith, Mark A Batzer, Jerilyn A Walker, Miriam K Konkel, Robert S Harris, Camilla M Whittington, Emily SW Wong, Neil J Gemmell, Emmanuel Buschiazzo, Iris M Vargas Jentzsch, Angelika Merkel, Juergen Schmitz, Anja Zemann, Gennady Churakov, Jan Ole Kriegs, Juergen Brosius, Elizabeth P Murchison, Ravi Sachidanandam, Carly Smith, Gregory J Hannon, Enkhjargal Tsend-Ayush, Daniel McMillan, Rosalind Attenborough, Willem Rens, Malcolm Ferguson-Smith, Christo. Genome analysis of the platypus reveals unique signatures of evolution.. Nature, 453, 175-U1, 2008. doi: 10.1038/nature06936.

  • SH Naik, P Sathe, HY Park, D Metcalf, AI Proietto, A Dakic, S Carotta, M. Bahlo, A. Papenfuss, JY Kwak, L Wu, K Shortman. Erratum: Development of plasmacytoid and conventional dendritic cell subtypes from single precursor cells derived in vitro and in vivo (Nature Immunology (2007) 10.1038/ni1522). Nature Immunology, 8, 2007.

  • Andrew M Scott, Fook-Thean Lee, Niall Tebbutt, Rebecca Herbertson, Sanjeev S Gill, Zhanqi Liu, Effie Skrinos, Carmel Murone, Timothy H Saunder, Bridget Chappell, A. Papenfuss, Aurora MT Poon, Wendie Hopkins, Fiona E Smyth, Duncan MacGregor, Lawrence M Cher, Achim A Jungbluth, Martin W Brechbiel, Roger Murphy, Antony W Burgess, Eric W Hoffman, Terrance G Johns, Lloyd J Old, Gerd Ritter. A phase I clinical trial with monoclonal antibody ch806 targeting transitional state and mutant epidermal growth factor receptors.. Proceedings of the National Academy of Sciences of the United States of America, 104, 4071-4076, 2007. doi: 10.1073/pnas.0611693104.

  • Andrew M Scott, Niall Tebbutt, Fook-Thean Lee, Tina Cavicchiolo, Zhanqi Liu, Sanjeev Gill, Aurora MT Poon, Wendie Hopkins, Fiona E Smyth, Carmel Murone, Duncan MacGregor, A. Papenfuss, Bridget Chappell, Timothy H Saunder, Martin W Brechbiel, Ian D Davis, Roger Murphy, Geoffrey Chong, Eric W Hoffman, Lloyd J Old, CAVICCIOLO, E SYMTH. A phase I biodistribution and pharmacokinetic trial of humanized monoclonal antibody Hu3s193 in patients with advanced epithelial cancers that express the Lewis-Y antigen.. Clinical cancer research : an official journal of the American Association for Cancer Research, 13, 3286-3292, 2007. doi: 10.1158/1078-0432.CCR-07-0284.

  • Ian D Davis, Gregory A Wiseman, Fook-Thean Lee, Denise N Gansen, Wendie Hopkins, A. Papenfuss, Zhanqi Liu, Timothy J Moynihan, Gary A Croghan, Alex A Adjei, Eric W Hoffman, James N Ingle, Lloyd J Old, Andrew M Scott, GA GROGHAN. A phase I multiple dose, dose escalation study of cG250 monoclonal antibody in patients with advanced renal cell carcinoma.. Cancer immunity : a journal of the Academy of Cancer Immunology, 7, 13, 2007.

  • Ian D Davis, Zhanqi Liu, Wayne Saunders, Fook-Thean Lee, Violeta Spirkoska, Wendie Hopkins, Fiona E Smyth, Geoffrey Chong, A. Papenfuss, Bridget Chappell, Aurora Poon, Timothy H Saunder, Eric W Hoffman, Lloyd J Old, Andrew M Scott, FE SYMTH. A pilot study of monoclonal antibody cG250 and low dose subcutaneous IL-2 in patients with advanced renal cell carcinoma.. Cancer immunity : a journal of the Academy of Cancer Immunology, 7, 14, 2007.

  • Shalin H Naik, Priyanka Sathe, Hae-Young Park, Donald Metcalf, Anna I Proietto, A. DAKIC, Sebastian Carotta, M. Bahlo, A. Papenfuss, Jong-Young Kwak, Li Wu, Ken Shortman, Meredith O Keeffe. Development of plasmacytoid and conventional dendritic cell subtypes from single precursor cells derived in vitro and in vivo.. Nature immunology, 8, 1217-1226, 2007. doi: 10.1038/ni1522.

  • Emily Sw Wong, Lauren J Young, A. Papenfuss, Katherine Belov. In silico identification of opossum cytokine genes suggests the complexity of the marsupial immune system rivals that of eutherian mammals.. Immunome research, 2, 4, 2006. doi: 10.1186/1745-7580-2-4.

  • Lawrence M Cher, Carmel Murone, Nathan Lawrentschuk, Shanker Ramdave, A. Papenfuss, Anthony Hannah, John I Sachinidis, Salvatore U Berlangieri, Gavin Fabinyi, Andrew M Scott. Correlation of hypoxic cell fraction and angiogenesis with glucose metabolic rate in gliomas using F-18-fluoromisonidazole, F-18-FDG PET, and immunohistochemical studies. Journal of nuclear medicine : official publication, Society of Nuclear Medicine, 47, 410-418, 2006.

  • E Wong, A. Papenfuss, K Belov. In-silico mining of the opossum genome for cytokine genes. TISSUE ANTIGENS, 66, 358 (1pp), 2005.

  • K Belov, JE Deakin, A. Papenfuss, JAM Graves, RD Miller. The immune supercomplex: Insights from the opossum MHC. TISSUE ANTIGENS, 66, 359 (1pp), 2005.

  • Y. Liu, A. Papenfuss, K Belov. Discovery of novel antimicrobial peptide genes in opossum genome. TISSUE ANTIGENS, 66, 358 (1pp), 2005.

  • Z Liu, N Tebbutt, F Lee, T Cavicchiolo, S Gill, AMT Poon, W Hopkins, FE Smyth, C Murone, D MacGregor, A. Papenfuss, B Chappell, TH Saunder, NW Brechbiel, ID Davis, R Murphy, G Chong, E Stockert, G Ritter, Scott, Old, Hoffman. Pharmacokinetics and biodistribution of humanized monoclonal antibody hu3S193 in a phase I trial of patients with advanced epithelial cancers which express the Lewis-gamma antigen. Tissue Antigens, 66, 481 (1pp), 2005.

  • G Chong, F Lee, W Hopkins, N Tebbutt, JS Cebon, AJ Mountain, B Chappel, A. Papenfuss, P Schleyer, P U, R Murphy, V Wirth, FE Smyth, N Potasz, A Poon, ID Davis, T Saunder, AW Burgess, EW Hoffman, LJ Old, AM Scott, Bridget Chappell, TG JOHNS. Phase I trial of I-131-huA33 in patients with advanced colorectal carcinoma. Clinical cancer research : an official journal of the American Association for Cancer Research, 11, 4818-4826, 2005. doi: 10.1158/1078-0432.CCR-04-2330.

  • AM Scott, FT Lee, R Jones, W Hopkins, D MacGregor, JS Cebon, A Hannah, G Chong, P U, A. Papenfuss, A Rigopoulos, S Sturrock, R Murphy, V Wirth, C Murone, FE Smyth, S Knight, S Welt, G Ritter, E Richards, EC Nice, AW Burgess, LJ Old. A phase I trial of humanized monoclonal antibody A33 in patients with colorectal carcinoma: biodistribution, pharmacokinetics, and quantitative tumor uptake.. Clinical cancer research : an official journal of the American Association for Cancer Research, 11, 4810-4817, 2005. doi: 10.1158/1078-0432.CCR-04-2329.

  • A. Papenfuss. In god we trust. Religion. INTERNATIONALE POLITIK, 59, 79-81, 2004.

  • HO Henkel, A. Papenfuss. Interview with Hans-Olaf on research and development in Genriany. INTERNATIONALE POLITIK, 59, 74-76, 2004.

  • A. Papenfuss. The United Nations in fight of global challenges. INTERNATIONALE POLITIK, 58, 62-64, 2003.

  • A. Papenfuss, G Chong, PJ Schleyer, B Chappell, AM Scott. A model of I-131-huA33 pharmacodynamics in patients with colorectal carcinoma.. JOURNAL OF NUCLEAR MEDICINE, 43, 210P (1pp), 2002.

  • A. Papenfuss. The United Nations - Duties, instruments and reforms. INTERNATIONALE POLITIK, 57, 69-70, 2002.

  • A. Papenfuss. Authority of law or law of the stronger? - Controversies regarding the International Criminal Court. INTERNATIONALE POLITIK, 57, 33-38, 2002.

  • A. Papenfuss. Skilled, capable and ambassadorial - Women in diplomatic service. INTERNATIONALE POLITIK, 56, 69-70, 2001.

  • A. Papenfuss. A look behind the scenes at the United Nations - Losing hope - My years of secretary general.. INTERNATIONALE POLITIK, 55, 63-65, 2000.

  • A. Papenfuss. Encyclopedia of the United Nations. INTERNATIONALE POLITIK, 55, 73-74, 2000.

  • A. Papenfuss. The protection of human rights as practiced by the United Nations. INTERNATIONALE POLITIK, 54, 59-61, 1999.

  • A. Papenfuss. Freedom and responsibility: Yearbook 1998/99. INTERNATIONALE POLITIK, 54, 59-61, 1999.

  • A. Papenfuss. Modern protection of minorities - Legal or political safeguards. INTERNATIONALE POLITIK, 54, 59-61, 1999.

  • A. Papenfuss. Human rights in Africa - Conception, violation, and legal protection within the framework of the OAU. INTERNATIONALE POLITIK, 54, 59-61, 1999.