Publications

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  • Gerry Tonkin-Hill, Shazia Ruybal-Pesántez, Kathryn E Tiedje, Virginie Rougeron, Michael F Duffy, Sedigheh Zakeri, Tepanata Pumpaibool, Pongchai Harnyuttanakorn, OraLee H Branch, Lastenia Ruiz-Mesía, Thomas S Rask, Franck Prugnolle, A. Papenfuss, Y. Chan, Karen P Day. Evolutionary analyses of the major variant surface antigen-encoding genes reveal population structure of Plasmodium falciparum within and between continents.. PLoS genetics, 17, e1009269 (26pp), 2021. doi: 10.1371/journal.pgen.1009269.

  • Hannah Johnston, Rebecca Jarman, Deepa Jeyaseelan, Y. Chan, Kimberly Johansen, S. Finch. Practitioners' perceptions of the ASQ‐TRAK developmental screening tool for use in Aboriginal children: A preliminary survey. Journal of paediatrics and child health, 56, 94-101, 2020. doi: 10.1111/jpc.14502.

  • Ashley P Ng, Hannah D Coughlan, Soroor Hediyeh-Zadeh, Kira Behrens, Timothy M Johanson, Michael Sze Yuan Low, Charles C Bell, Omer Gilan, Y. Chan, Andrew J Kueh, Thomas Boudier, Rebecca Feltham, Anna Gabrielyan, Ladina DiRago, Craig D Hyland, Helen Ierino, Sandra Mifsud, Elizabeth Viney, Tracy Willson, Mark A Dawson, Rhys S Allan, Marco J Herold, Kelly Rogers, David M Tarlinton, G. Smyth, Melissa J Davis, Stephen L Nutt, Warren S Alexander. An Erg-driven transcriptional program controls B cell lymphopoiesis.. Nature communications, 11, 3013 (14pp), 2020. doi: 10.1038/s41467-020-16828-y.

  • C. Burt, Y. Chan. Accurate costing in mixed integer utilisation mining models. 18th World IMACS Congress and MODSIM 2009 - International Congress on Modelling and Simulation: Interfacing Modelling and Simulation with Mathematical and Computational Sciences, Proceedings, 204-210, 2020.

  • Y. Chan, C Robin. Reconciliation of a gene network and species tree. Journal of Theoretical Biology, 472, 54-66, 2019. doi: 10.1016/j.jtbi.2019.04.001.

  • Gerry Tonkin-Hill, Shazia Ruybal-Pesantez, Kathryn E Tiedje, Virginie Rougeron, Sedigheh Zakeri, Tepanata Pumpaibool, Pingchai Harnyuttanakorn, OraLee H Branch, Lastenia Ruiz-Mesia, Michael F Duffy, Thomas S Rask, Franck Prugnolle, Y. Chan, A. Papenfuss, Karen P Day. GLOBAL STRUCTURE OF THE VAR GENES ENCODING THE MAJOR VARIANT SURFACE ANTIGEN OF PLASMODIUM FALCIPARUM. AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE, 101, 502-503, 2019.

  • Ashley Ng, Hannah Coughlan, Soroor Hediyeh-zadeh, Kira Behrens, Timothy Johanson, Michael Sze Yuan Low, Charles Bell, Omer Gilan, Y. Chan, Andrew Kueh, Thomas Boudier, Ladina DiRago, Craig Hyland, Helen Ierino, Sandra Mifsud, Elizabeth Viney, Tracy Willson, Mark Dawson, Rhys Allan, Marco Herold, Kelly Rogers, David Tarlinton, G. Smyth, Melissa Davis, Stephen Nutt, Warren Alexander. An Erg driven transcriptional program controls B-lymphopoiesis. 861542, Cold Spring Harbor Laboratory, 2019. doi: 10.1101/861542.

  • Y. Chan, A. Rechnitzer. Upper bounds on the growth rates of independent sets in two dimensions via corner transfer matrices. Linear Algebra and its Applications, 555, 139-156, 2018. doi: 10.1016/j.laa.2018.06.008.

  • C. Burt, Y. Chan, L Caccetta. Accurate costing of mining equipment. 150, 145-152, SPRINGER INTERNATIONAL PUBLISHING AG, 2018. doi: 10.1007/978-3-319-76255-5_9.

  • C. Burt, Louis Caccetta, Y. Chan. Utilisation-based equipment selection. 150, 115-143, SPRINGER INTERNATIONAL PUBLISHING AG, 2018. doi: 10.1007/978-3-319-76255-5_8.

  • Y. Chan, V Ranwez, C Scornavacca. Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations.. Journal of theoretical biology, 432, 1-13, 2017. doi: 10.1016/j.jtbi.2017.08.008.

  • Y Cong, Y. Chan, C. Phillips, MA Langston, MA Ragan. Robust inference of genetic exchange communities from microbial genomes using TF-IDF. Frontiers in Microbiology, 8, 2017. doi: 10.3389/fmicb.2017.00021.

  • Guillaume Bernard, Y. Chan, Xin-Yi Chua, Yingnan Cong, James M Hogan, Stefan R Maetschke, Mark A Ragan. Alignment-free inference of hierarchical and reticulate phylogenomic relationships. Briefings in Bioinformatics, 2017. doi: 10.1093/bib/bbx067.

  • Y Cong, Y. Chan, MA Ragan. Exploring lateral genetic transfer among microbial genomes using TF-IDF.. Scientific reports, 6, 29319, 2016. doi: 10.1038/srep29319.

  • Y Cong, Y. Chan, MA Ragan. A novel alignment-free method for detection of lateral genetic transfer based on TF-IDF.. Scientific reports, 6, 30308, 2016. doi: 10.1038/srep30308.

  • Y. Chan. Upper bounds on the growth rates of hard squares and related models via corner transfer matrices. Discrete Mathematics and Theoretical Computer Science, 2015.

  • Y. Chan, V Ranwez, C Scornavacca. Exploring the space of gene/species reconciliations with transfers.. Journal of mathematical biology, 71, 1179-1209, 2015. doi: 10.1007/s00285-014-0851-2.

  • Y. Chan, A. Rechnitzer. Accurate Lower Bounds on 2-D Constraint Capacities From Corner Transfer Matrices. IEEE Transactions on Information Theory, 60, 3845-3858, 2014. doi: 10.1109/TIT.2014.2321554.

  • Y. Chan. Series expansions from the corner transfer matrix renormalization group method: II. Asymmetry and high-density hard squares. Journal of Physics A: Mathematical and Theoretical, 46, 125009, 2013. doi: 10.1088/1751-8113/46/12/125009.

  • Y. Chan, Jean-François Marckert, Thomas Selig. A natural stochastic extension of the sandpile model on a graph. Journal of Combinatorial Theory, Series A, 120, 1913-1928, 2013. doi: 10.1016/j.jcta.2013.07.004.

  • Y. Chan, Vincent Ranwez, Celine Scornavacca. Reconciliation-based detection of co-evolving gene families. BMC Bioinformatics, 14, 332, 2013. doi: 10.1186/1471-2105-14-332.

  • Y. Chan. Series expansions from the corner transfer matrix renormalization group method: the hard-squares model. Journal of Physics A: Mathematical and Theoretical, 45, 085001, 2012. doi: 10.1088/1751-8113/45/8/085001.

  • Y. Chan, A. Rechnitzer. A Monte Carlo study of non-trapped self-avoiding walks. Journal of Physics A: Mathematical and Theoretical, 45, 405004, 2012. doi: 10.1088/1751-8113/45/40/405004.

  • Y. Chan, A. Guttmann, B Nickel, J. Perk. The Ising susceptibility scaling function. Journal of Statistical Physics, 145, 549-590, 2011. doi: 10.1007/s10955-011-0212-0.

  • C. Burt, Y. Chan, N. Sonenberg. Exact models for the k-connected minimum energy problem. 28, 392-406, Springer, 2010. doi: 10.1007/978-3-642-11723-7_26.

  • Y. Chan, P. Hall. Using evidence of mixed populations to select variables for clustering very high-dimensional data. Journal of the American Statistical Association, 105, 798-809, 2010. doi: 10.1198/jasa.2010.tm09404.

  • C. Burt, Y. Chan. Accurate costing in mixed integer utilisation mining models. 18th IMACS World Congress - MODSIM09 International Congress on Modelling and Simulation, 204-210, 2009.

  • Y. Chan, P. Hall. Scale adjustments for classifiers in high-dimensional, low sample size settings. Biometrika, 96, 469-478, 2009. doi: 10.1093/biomet/asp007.

  • Y. Chan, P. Hall. Robust nearest-neighbor methods for classifying high-dimensional data. Annals of Statistics, 37, 3186-3203, 2009. doi: 10.1214/08-AOS591.

  • Y. Chan, A. Owczarek, A. Rechnitzer, G. Slade. Mean unknotting times of random knots and embeddings. J. Stat. Mech.: Theor. Exp., P05004 (16pp), 2007. doi: 10.1088/1742-5468/2007/05/P05004. PDF.

  • Y. Chan. Selected problems in lattice statistical mechanics. 2006. PDF.

  • Y. Chan, A. Guttmann. Some results for directed lattice walkers in a strip. Discrete Mathematics and Theoretical Computer Science, 1, 27-38, 2003.