Recent Publications

  • Annie Xin, Frederick Masson, Yang Liao, Simon Preston, Tianxia Guan, Renee Gloury, Moshe Olshansky, Jian-Xin Lin, Peng Li, T. Speed, G. Smyth, Matthias Ernst, Warren J Leonard, Marc Pellegrini, Susan M Kaech, Stephen L Nutt, Wei Shi, Gabrielle T Belz, Axel Kallies. A molecular threshold for effector CD8(+) T cell differentiation controlled by transcription factors Blimp-1 and T-bet. Nature Immunology, 17, 422-+, 2016. doi: 10.1038/ni.3410.

  • F Masson, A Xin, Y Liao, S Preston, T Guan, R Gloury, M Olshansky, J-X Lin, P Li, T. Speed, G. Smyth, M Ernst, WJ Leonard, M Pellegrini, S Kaech, SL Nutt, W Shi, GT Belz, A Kallies. A combinatorial threshold model for effector differentiation of CD8(+) T cells mediated by Blimp-1 and T-bet. European Journal of Immunology, 46, 5 (1pp), 2016.

  • L. Gandolfo, M. Bahlo, T. Speed. Dating Rare Mutations from Small Samples with Dense Marker Data. Genetics, 197, 1315-U437, 2014. doi: 10.1534/genetics.114.164616.

  • D Chandrananda, NP Thorne, D Ganesamoorthy, DL Bruno, Y Benjamini, T. Speed, HR Slater, M. Bahlo. Investigating and Correcting Plasma DNA Sequencing Coverage Bias to Enhance Aneuploidy Discovery. PLoS One, 9, e86993 (14pp), 2014. doi: 10.1371/journal.pone.0086993.

  • Iris Tan, Leanne Mackin, Nancy Wang, A. Papenfuss, Colleen Elso, Michelle Ashton, Fiona Quirk, B. Phipson, M. Bahlo, T. Speed, G. Smyth, Grant Morahan, Thomas Brodnicki. Congenic mouse strains identify a novel gene for which allelic variation affects susceptibility to type 1 diabetes. Journal of Immunology, 186, 2011.

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Current Postgraduate Supervision

Name Thesis title
Daniel CAMERON "Computational problems in cancer genomics data"
Lyndal HENDEN "Analysis of structural variation in sequencing data in pedigrees"
Stephen LUEN "Analysis of the residual disease samples from the NeoALTTO study"
Ehtesham MOFIZ "Scabies mite genome project"

Past Postgraduate Supervision

Name Thesis title
Benjamin LANSDELL "Numerical models of the Wnt cell-signaling pathway"

Past MSc Students

Name Project title
Benjamin LANSDELL "Computational Gene Prediction Using Generalised Hidden Markov Models and Tiling Arrays"